QUALITATIVE COMPARISON OF WILD YEAST STRAINS INHABITING PLANT ORGANS OF CULTURED CEREAL GRAINS AND ADJACENT PLANT COMMUNITIES IN NORTH MACEDONIA

Authors

  • Nikola Radmanovikj Bioengineering LLC, Research center for applied microbiology and biotechnology ICPMB d-r Kungulovski, Skopje, North Macedonia
  • Marija Todorovska Ivkovikj Bioengineering LLC, Research center for applied microbiology and biotechnology ICPMB d-r Kungulovski, Skopje, North Macedonia
  • Sofija Kostandinovska Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia
  • Ivana Bojkovska Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia
  • Violeta Boshkovska Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia
  • Elena Usta Petrova Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia

Keywords:

wild yeasts, agroecosystems, phytosphere, yeast mycology

Abstract

The microbial communities of the phytosphere are diverse ecosystems which impact the growth and development of their plant host via complex feedback mechanisms. Wild yeasts are ubiquitous inhabitants of these microbial systems (Gouka et al., 2022). Their functions are diverse, however their metabolic adaptability does not confer them an immunity to the hazardous effects of herbicides, pesticides and insecticides (Ando et al., 2005). Global trends of elucidating these communities are already in effect, most often with the end goal of discovering novel strains for industrial demand. The goal of this study is to achieve an inquiry into the biodiversity of yeasts which naturally occupy our cereal cultures within the crop cycle and the wild yeasts of adjacent plant communities. With the goal in mind, we sampled cereal grains from cultures of the genera Triticum, Hordeum, Secale and Avena and adjacent flowering plants of the genera Papaver, Achillea and Arrhenatherum. These samples were spread across 11 sampling points between three regions of different altitude and climate in North Macedonia. Using classic media based isolation techniques, unique wild yeasts strains were cultivated from each sample and cross-referenced across several parameters, including morphological characteristics such as cell dimensions and mean deviation of dimensions across cells of the same isolate and metabolic characteristics such as tolerance to cycloheximide. This data served to generate complete descriptions of each isolate and determine trends across these fascinating yeast communities. These adaptations showed a general trend of a single dominant phenotype (50% or more) of the captured strains, along with an opportunistic filamentous phenotype across most samples. Among all samples, the predominant phenotype presented as typical smooth confluent yeast morphology with sweet olfactory profiles and slightly rod-like cells of various sizes. The end results showed a trend of convergent traits emerging among strains isolated from the same samples, which may point towards a host-independent adaptation strategy, which represents an interesting avenue of future research for the development of novel wild yeast strains for biotechnology and ecological monitoring.

Author Biographies

Sofija Kostandinovska, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia

Department of Microbiology and Microbial Biotechnology, Institute of Biology

Ivana Bojkovska, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia

Department of Microbiology and Microbial Biotechnology, Institute of Biology

Violeta Boshkovska, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia

Department of Microbiology and Microbial Biotechnology, Institute of Biology

Elena Usta Petrova, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University in Skopje, North Macedonia

Department of Microbiology and Microbial Biotechnology, Institute of Biology

References

Ando, A., Suzuki, C., & Shima, J. (2005). Survival of genetically modified and self-cloned strains of commercial baker’s yeast in simulated natural environments: Environmental risk assessment. Applied and Environmental Microbiology, 71(11), 7075–7082. https://doi.org/10.1128/AEM.71.11.7075-7082.2005

Barnett, J. A., Payne, R. W., Yarrow, D., & Barnett, L. (2000). Yeasts: Characteristics and Identification. Cambridge University Press.

Boekhout, T., Aime, M. C., Begerow, D., Gabaldón, T., Heitman, J., Kemler, M., Khayhan, K., Lachance, M.-A., Louis, E. J., Sun, S., Vu, D., & Yurkov, A. (2021). The evolving species concepts used for yeasts: From phenotypes and genomes to speciation networks. Fungal Diversity, 109(1), 27–55. https://doi.org/10.1007/s13225-021-00475-9

Chobanova, M., Avukatov, V., Atanasovska, K., Melovska, N., Brajanoska, R., Shushlevska, M., Jovanovska, D., Trpeski, V., Jordanov, S., Gicevski, B., Sterijovski, B., Nikolov, L., Velevski, M., Velkovski, N., Petrovski, S., Najdovski, B., Slavevska-Stamenkovikj, V., Stavrikj, V., Gjorgjievski, S., … Hristovski, S. (2024). Mapping and national assessment of ecosystems and their condition in North Macedonia. Macedonian Journal of Ecology and Environment, 26(1), 83–116.

Devi, R., Palanisamy, Y., Balachandar, D., & Dhandapani, M. (2025). Potentials of Soil Yeasts for Plant Growth and Soil Health in Agriculture: A Review. Journal of Pure and Applied Microbiology, 19. https://doi.org/10.22207/JPAM.19.1.10

Giehl, A., dos Santos, A. A., Cadamuro, R. D., Tadioto, V., Guterres, I. Z., Prá Zuchi, I. D., Minussi, G. do A., Fongaro, G., Silva, I. T., & Alves, S. L. (2023). Biochemical and Biotechnological Insights into Fungus-Plant Interactions for Enhanced Sustainable Agricultural and Industrial Processes. Plants, 12(14), Article 14. https://doi.org/10.3390/plants12142688

Gouka, L., Raaijmakers, J. M., & Cordovez, V. (2022). Ecology and functional potential of phyllosphere yeasts. Trends in Plant Science, 27(11), 1109–1123. https://doi.org/10.1016/j.tplants.2022.06.007

Hanane, T., Najoua, B., Salsabil, H., Abdellatif, J. I., Dalila, B., Ahmad, I., BukharI, S. A. R., Irfan, M., Chen, L., Hicham, B., Hanane, T., Najoua, B., Salsabil, H., Abdellatif, J. I., Dalila, B., Ahmad, I., BukharI, S. A. R., Irfan, M., Chen, L., & Hicham, B. (2022). Qualitative Screening of Yeast Biodiversity for Hydrolytic Enzymes Isolated from the Gastrointestinal Tract of a Coprophage “Gymnopleurus sturmi” and Dung of Ruminants. Fermentation, 8(12). https://doi.org/10.3390/fermentation8120692

Hernández-Fernández, M., Cordero-Bueso, G., Ruiz-Muñoz, M., & Cantoral, J. M. (2021). Culturable Yeasts as Biofertilizers and Biopesticides for a Sustainable Agriculture: A Comprehensive Review. Plants (Basel, Switzerland), 10(5), 822. https://doi.org/10.3390/plants10050822

Hinsu, A., Dumadiya, A., Joshi, A., Kotadiya, R., Andharia, K., Koringa, P., & Kothari, R. (2021). To culture or not to culture: A snapshot of culture-dependent and culture-independent bacterial diversity from peanut rhizosphere. PeerJ, 9, e12035. https://doi.org/10.7717/peerj.12035

Holland, S. L., Reader, T., Dyer, P. S., & Avery, S. V. (2014). Phenotypic heterogeneity is a selected trait in natural yeast populations subject to environmental stress. Environmental Microbiology, 16(6), 1729–1740. https://doi.org/10.1111/1462-2920.12243

Huseyin, C. E., Rubio, R. C., O’Sullivan, O., Cotter, P. D., & Scanlan, P. D. (2017). The Fungal Frontier: A Comparative Analysis of Methods Used in the Study of the Human Gut Mycobiome. Frontiers in Microbiology, 8, 1432. https://doi.org/10.3389/fmicb.2017.01432

Kasegn, M. M., Abrha, G. T., Weldemichael, M. Y., Berhanu, A. D., Semere, T., Bayratsion, Y. T., Menghistu, H. T., Weldeabzgi, L. T., Kassa, A. B., Mesele, E., Yaekob, A. T., Mossa, M. M., Haftu, S. Z., Gebremedhn, H. M., Meresa, B. K., & Redda, Y. T. (2024). Characterization of wild yeasts isolated from cereal sourdoughs and their potential for leavening wheat dough. Discover Food, 4(1), 4. https://doi.org/10.1007/s44187-024-00072-0

Klaps, J., Lievens, B., & Álvarez-Pérez, S. (2020). Towards a better understanding of the role of nectar-inhabiting yeasts in plant-animal interactions. Fungal Biology and Biotechnology, 7, 1. https://doi.org/10.1186/s40694-019-0091-8

Kostandinovska, S., Radmanovik, N., Boskovski, O., Kungulovski, D., & Atanasova-Pancevska, N. (2024). Enumeration and antimicrobial activity of bacterial isolates from undisturbed and contaminated soils in North Macedonia. Macedonian Journal of Ecology and Environment, 26(2), Article 2. https://doi.org/10.59194/MJEE24262129k

Kowalska, J., Krzymińska, J., & Tyburski, J. (2022). Yeasts as a Potential Biological Agent in Plant Disease Protection and Yield Improvement—A Short Review. Agriculture, 12(9), 1–15.

Lugtenberg, B. J. J., Caradus, J. R., & Johnson, L. J. (2016). Fungal endophytes for sustainable crop production. FEMS Microbiology Ecology, 92(12), fiw194. https://doi.org/10.1093/femsec/fiw194

Naranjo‐Ortiz, M. A., & Gabaldón, T. (2019). Fungal evolution: Major ecological adaptations and evolutionary transitions. Biological Reviews of the Cambridge Philosophical Society, 94(4), 1443–1476. https://doi.org/10.1111/brv.12510

Olazabal, L., Dapzol, Q., Albertin, W., Miot-Sertier, C., Deleris-Bou, M., Boisramé, A., Dols-Lafargue, M., Olazabal, L., Dapzol, Q., Albertin, W., Miot-Sertier, C., Deleris-Bou, M., Boisramé, A., & Dols-Lafargue, M. (2025). Brettanomyces bruxellensis Strains Display Variable Resistance to Cycloheximide: Consequences on the Monitoring of Wine. Microorganisms, 13(11). https://doi.org/10.3390/microorganisms13112597

Rodrigues, N., Gonçalves, G., Pereira-da-Silva, S., Malfeito-Ferreira, M., & Loureiro, V. (2001). Development and use of a new medium to detect yeasts of the genera Dekkera/Brettanomyces. Journal of Applied Microbiology, 90(4), 588–599. https://doi.org/10.1046/j.1365-2672.2001.01275.x

Tadesse, T., Dese, D., Dabassa, A., & Bacha, K. (2025). Diversity, Distribution, and Phenotypic Characterization of Cultivable Wild Yeasts Isolated from Natural Forest. F1000Research, 105(14).

Valentini, B., Gatti, N., Bossi, S., Vigani, G., & Stefanini, I. (2025). Environmental characteristics and weather impact yeast populations and their dynamics in spontaneous fermentations. Current Research in Microbial Sciences, 9, 100410. https://doi.org/10.1016/j.crmicr.2025.100410

Xu, C., Xia, H., Zhang, S., Zhao, Y., Qi, Z., Sun, Z., & Zhao, Y. (2020). Isolation, screening, identification and tolerance of yeast in cherry wine lees. International Journal of Food Engineering, 16(9). https://doi.org/10.1515/ijfe-2019-0385

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Published

2026-02-12

How to Cite

Radmanovikj, N., Todorovska Ivkovikj, M., Kostandinovska, S., Bojkovska, I., Boshkovska, V., & Usta Petrova, E. (2026). QUALITATIVE COMPARISON OF WILD YEAST STRAINS INHABITING PLANT ORGANS OF CULTURED CEREAL GRAINS AND ADJACENT PLANT COMMUNITIES IN NORTH MACEDONIA. KNOWLEDGE - International Journal , 74(3), 353–359. Retrieved from http://ojs.ikm.mk/index.php/kij/article/view/8102